Seol Kyoung Jung, Ph.D.

Summary

Seol Kyoung Jung, Ph.D., earned her B.S. degree with a double major in computer science and engineering and life science at POSTECH, Korea. She then pursued a Ph.D in computational biology at Washington University in St. Louis, USA. She worked under Dr. Sean Eddy on the ncRNA screening and novel ncRNA detection in Ciliate Oxytricha trifallax. 

In 2015, Dr. Jung joined NIAMS as a research fellow. She worked on various computational genomic analyses in Dr. Casellas' lab. In 2023, she moved into the Biodata Mining and Discovery Section and conducts computational analysis as a staff scientist.

Research Statement

Dr. Jung's research focuses on these main areas:

Transcription regulation and genomic architecture.

Transcriptional regulation is how cells coordinate the expression of individual genes or groups of genes. This process can be directly or indirectly affected by the genome architecture.

We explore how genome architecture is established and its connection to transcription and genome fragility. We also study how a transcriptional regulation component, called the mediator complex, works with the PolII complex to connect promoter, enhancer, and colocalization patterns of transcriptional components to decipher the syntax of this regulation.

Recent studies with single cells show that transcription is not a continuous activity but occurs in bursts. By developing a computer model to analyze single-cell transcriptomes, we provide a comprehensive view of bursting in a cell population for the first time. This approach allows us to computationally identify individual genes deficient in proteins that play key roles in transcription and determine whether they regulate bursting.

B cell V(D)J recombination activation and antibody generation.

Transcription controls several processes in maturing B cells. We explore how transcription controls B cell activation, B cell fate, and recombination. Through these studies, we can design and produce more efficient anti-SARS-CoV-2 antibodies and explore how they target antigen crevices not recognized by bulkier antibodies.

Scientific Publications

Mechanism for local attenuation of DNA replication at double-strand breaks.

Sebastian R, Sun EG, Fedkenheuer M, Fu H, Jung S, Thakur BL, Redon CE, Pegoraro G, Tran AD, Gross JM, Mosavarpour S, Kusi NA, Ray A, Dhall A, Pongor LS, Casellas R, Aladjem MI
Nature.
2025 Mar;
639(8056).
doi: 10.1038/s41586-024-08557-9
PMID: 39972127

3D chromatin architecture, BRD4, and Mediator have distinct roles in regulating genome-wide transcriptional bursting and gene network.

Trzaskoma P, Jung S, Pękowska A, Bohrer CH, Wang X, Naz F, Dell'Orso S, Dubois WD, Olivera A, Vartak SV, Zhao Y, Nayak S, Overmiller A, Morasso MI, Sartorelli V, Larson DR, Chow CC, Casellas R, O'Shea JJ
Sci Adv.
2024 Aug 9;
10(32).
doi: 10.1126/sciadv.adl4893
PMID: 39121214

Nanobodies from camelid mice and llamas neutralize SARS-CoV-2 variants.

Xu J, Xu K, Jung S, Conte A, Lieberman J, Muecksch F, Lorenzi JCC, Park S, Schmidt F, Wang Z, Huang Y, Luo Y, Nair MS, Wang P, Schulz JE, Tessarollo L, Bylund T, Chuang GY, Olia AS, Stephens T, Teng IT, Tsybovsky Y, Zhou T, Munster V, Ho DD, Hatziioannou T, Bieniasz PD, Nussenzweig MC, Kwong PD, Casellas R
Nature.
2021 Jul;
595(7866).
doi: 10.1038/s41586-021-03676-z
PMID: 34098567

A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers.

El Khattabi L, Zhao H, Kalchschmidt J, Young N, Jung S, Van Blerkom P, Kieffer-Kwon P, Kieffer-Kwon KR, Park S, Wang X, Krebs J, Tripathi S, Sakabe N, Sobreira DR, Huang SC, Rao SSP, Pruett N, Chauss D, Sadler E, Lopez A, Nóbrega MA, Aiden EL, Asturias FJ, Casellas R
Cell.
2019 Aug 22;
178(5).
doi: 10.1016/j.cell.2019.07.011
PMID: 31402173

The Energetics and Physiological Impact of Cohesin Extrusion.

Vian L, Pękowska A, Rao SSP, Kieffer-Kwon KR, Jung S, Baranello L, Huang SC, El Khattabi L, Dose M, Pruett N, Sanborn AL, Canela A, Maman Y, Oksanen A, Resch W, Li X, Lee B, Kovalchuk AL, Tang Z, Nelson S, Di Pierro M, Cheng RR, Machol I, St Hilaire BG, Durand NC, Shamim MS, Stamenova EK, Onuchic JN, Ruan Y, Nussenzweig A, Levens D, Aiden EL, Casellas R
Cell.
2018 Sep 20;
175(1).
doi: 10.1016/j.cell.2018.09.002
PMID: 30241609

Genome Organization Drives Chromosome Fragility.

Canela A, Maman Y, Jung S, Wong N, Callen E, Day A, Kieffer-Kwon KR, Pekowska A, Zhang H, Rao SSP, Huang SC, Mckinnon PJ, Aplan PD, Pommier Y, Aiden EL, Casellas R, Nussenzweig A
Cell.
2017 Jul 27;
170(3).
doi: 10.1016/j.cell.2017.06.034
PMID: 28735753

Education

POSTECH, KOREA 
B.S. in Computer Science and Engineering (1997-2002) 

POSTECH, KOREA 
B.S. in Life Science (1997-2002) 

Washington University in St. Louis 
Ph. D. in Computational Biology (2003-2011)

Experience

Postdoctoral Fellowship 
Janelia Farm Research Center, HHMI (2011-2015) 

Research Fellow 
NIAMS, NIH (2015-2019) 

Staff Scientist 
NIAMS, NIH (2019-present)

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