Pawel Trzaskoma, Ph.D.

Summary

Dr. Pawel Trzaskoma earned his Ph.D. in Cell Biology in 2019, focusing on the spatial organization of the human genome. His research lies at the intersection of super-resolution microscopy, 3D electron microscopy, chromatin architecture, and transcriptional regulation. He is particularly interested in how the three-dimensional structure of chromatin influences gene expression programs in health and disease.

Dr. Trzaskoma uses single-cell RNA sequencing and advanced imaging approaches to investigate gene expression variability and transcriptional dynamics at the single-cell level. His research aims to deepen our understanding of how genome organization at multiple scales—ranging from enhancer-promoter interactions to higher-order chromatin architecture—affects cellular identity and responses to environmental cues.

At NIAMS, Dr. Trzaskoma works in interdisciplinary projects integrating quantitative imaging, single-cell transcriptomics, and computational modeling to study the principles governing transcriptional bursting and epigenetic regulation. His long-term goal is to uncover how spatial genome organization contributes to cell-type-specific gene regulation and how its disruption may lead to disease.

Scientific Publications

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

Tang Z, Luo OJ, Li X, Zheng M, Zhu JJ, Szalaj P, Trzaskoma P, Magalska A, Wlodarczyk J, Ruszczycki B, Michalski P, Piecuch E, Wang P, Wang D, Tian SZ, Penrad-Mobayed M, Sachs LM, Ruan X, Wei CL, Liu ET, Wilczynski GM, Plewczynski D, Li G, Ruan Y
Cell.
2015 Dec 17;
163(7).
doi: 10.1016/j.cell.2015.11.024
PMID: 26686651

Blank spots on the map: some current questions on nuclear organization and genome architecture.

Adriaens C, Serebryannyy LA, Feric M, Schibler A, Meaburn KJ, Kubben N, Trzaskoma P, Shachar S, Vidak S, Finn EH, Sood V, Pegoraro G, Misteli T
Histochem Cell Biol.
2018 Dec;
150(6).
doi: 10.1007/s00418-018-1726-1
PMID: 30238154

Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization.

Trzaskoma P, Ruszczycki B, Lee B, Pels KK, Krawczyk K, Bokota G, Szczepankiewicz AA, Aaron J, Walczak A, Śliwińska MA, Magalska A, Kadlof M, Wolny A, Parteka Z, Arabasz S, Kiss-Arabasz M, Plewczyński D, Ruan Y, Wilczyński GM
Nat Commun.
2020 May 1;
11(1).
doi: 10.1038/s41467-020-15987-2
PMID: 32358536

Activation-induced chromatin reorganization in neurons depends on HDAC1 activity.

Grabowska A, Sas-Nowosielska H, Wojtas B, Holm-Kaczmarek D, Januszewicz E, Yushkevich Y, Czaban I, Trzaskoma P, Krawczyk K, Gielniewski B, Martin-Gonzalez A, Filipkowski RK, Olszynski KH, Bernas T, Szczepankiewicz AA, Sliwinska MA, Kanhema T, Bramham CR, Bokota G, Plewczynski D, Wilczynski GM, Magalska A
Cell Rep.
2022 Feb 15;
38(7).
doi: 10.1016/j.celrep.2022.110352
PMID: 35172152

Doxorubicin resistance involves modulation of interferon signaling, transcriptional bursting, and gene co-expression patterns of U-ISGF3-related genes.

Trzaskoma P, Jung S, Kanno Y, O'Shea JJ, Chow CC
Neoplasia.
2024 Dec;
58().
doi: 10.1016/j.neo.2024.101071
PMID: 39405604

3D chromatin architecture, BRD4, and Mediator have distinct roles in regulating genome-wide transcriptional bursting and gene network.

Trzaskoma P, Jung S, Pękowska A, Bohrer CH, Wang X, Naz F, Dell'Orso S, Dubois WD, Olivera A, Vartak SV, Zhao Y, Nayak S, Overmiller A, Morasso MI, Sartorelli V, Larson DR, Chow CC, Casellas R, O'Shea JJ
Sci Adv.
2024 Aug 9;
10(32).
doi: 10.1126/sciadv.adl4893
PMID: 39121214

Education

Nencki Institute of Experimental Biology, Polish Academy of Sciences (PAS)
Ph.D., Cell Biology (2019)

University of Warsaw
M.Sc., Molecular Biotechnology (2014)

University of Lodz
B.Sc., Biotechnology (2012)

Experience

Postdoctoral Fellow
NIH/NIAMS (2019-present)

Ph.D. Student 
Nencki Institute, PAS (2014-2019)

Special Volunteer
NIH/NCI (2018)

Short Term Visitor 
Advanced Imaging Center, Janelia Research Campus HHMI (2016)

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